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one-color microarray-based gene expression analysis  (Agilent technologies)


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    Agilent technologies one-color microarray-based gene expression analysis
    One Color Microarray Based Gene Expression Analysis, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+for+gene+expression+analysis/pm39074525-318-4-1
    Average 90 stars, based on 1 article reviews
    one-color microarray-based gene expression analysis - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Investigation of Genes Associated With Atherosclerosis in Patients With Systemic Lupus Erythematosus
    Article Snippet: For the whole-genome gene expression analysis, one-color microarray-based gene expression analysis kit (Agilent Technologies, CA, USA) was used in this study.

    Article Title: Therapeutic targets for Alzheimer's disease
    Article Snippet: The suitability of the RNA for microarray based gene expression analysis was determined by Agilent RNA nano-chip analysis.

    Article Title: ELF3 mediates IL-1α induced differentiation of mesenchymal stem cells to inflammatory iCAFs.
    Article Snippet: RNA from hpMSCs were submitted to BCM's Genomic and RNA Pro- filing Core and processed for gene expression analysis via the Sur- ePrint G3 Human Gene Expression 8x60K v2 Microarray (Agilent).

    Microarray:

    Article Title: Long Non-Coding RNA and mRNA Expression Analysis in Liver of Mice With Clonorchis sinensis Infection.
    Article Snippet: Total RNA was quantified using a NanoDrop ND-2000 (Thermo Scientific, Waltham, MA, USA), and RNA integrity was assessed using an Agilent Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA, USA). .. Three pairs of liver samples were selected for lncRNA microarray analysis using an Agilent Mouse Gene Expression Array (8*60K, design ID: 028005). .. The microarray contains 55,681 probes for 39,430 mouse mRNA and 16,251 mouse lncRNAs, which are derived from RefSeq Build 37, Ensemble Release 55, Unigene Build 176, GenBank (Apr 2009), and RIKEN 3.

    Article Title: Long Non-Coding RNA and mRNA Expression Analysis in Liver of Mice With Clonorchis sinensis Infection
    Article Snippet: Total RNA was quantified using a NanoDrop ND-2000 (Thermo Scientific, Waltham, MA, USA), and RNA integrity was assessed using an Agilent Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA, USA). .. Three pairs of liver samples were selected for lncRNA microarray analysis using an Agilent Mouse Gene Expression Array (8*60K, design ID: 028005). .. The microarray contains 55,681 probes for 39,430 mouse mRNA and 16,251 mouse lncRNAs, which are derived from RefSeq Build 37, Ensemble Release 55, Unigene Build 176, GenBank (Apr 2009), and RIKEN 3.

    Article Title: Transcriptomic analysis reveals distinct adaptive molecular mechanism in the hippocampal CA3 from rats susceptible or not-susceptible to hyperthermia-induced seizures.
    Article Snippet: :(0123456789) Scientific Reports | (2023) 13:10265 | https://doi.org/10.1038/s41598-023-37535-w dye Cy3 followed the manufacturer’s protocols (One-Color Microarray-Based Gene Expression Analysis-Quick Amp Labeling and miRNA Complete Labeling and Hyb Kit, Agilent Technologies). .. A subset of 58 RNA samples was used for miRNA expression analysis, using the whole rat miRNA 8x15K oligonucleotide microarrays (Rat miRNA Microarray slide, G4471A-070154, Agilent Technologies), containing probes for 758 rat miRNAs based on miRBase database (release 21.0). .. The images were captured by the reader Agilent Bundle according to the parameters recommended for bioarrays and extracted by Agilent Feature Extraction software version 11.5.1.1 (https:// www. agile nt. com/) for both gene and miRNA expression.

    Article Title: Growth and Differentiation Factor 3 Induces Expression of Genes Related to Differentiation in a Model of Cancer Stem Cells and Protects Them from Retinoic Acid-Induced Apoptosis
    Article Snippet: To induce differentiation, NCCIT cells were treated with 10 μM all-trans retinoic acid (Sigma, Germany) for 14 days. .. For the transcriptome analysis human genome CGH Microarray 44K (Agilent Technologies, USA) was utilized according to manufactures protocol. .. In brief, the isolated RNA was labeled by Low RNA Input Fluorescent Linear Amplification kit (Agilent Technologies, USA), fragmented, mixed with control targets and hybridized overnight.

    Article Title: MicroRNA-145 Regulates Human Corneal Epithelial Differentiation
    Article Snippet: MicroRNA profiling was performed using Agilent Human microRNA Microarray V2 platform, which screens for the expression of 723 human microRNAs from Sanger database v.10.1. .. For gene expression analysis, Agilent Whole Human Genome Oligo Microarray was used. .. RNA samples were labeled with cyanine-3 (Cy3) using the Agilent One–Color Labeling kit and hybridized to the array according to the manufacturer's protocol.

    Gene Expression:

    Article Title: Long Non-Coding RNA and mRNA Expression Analysis in Liver of Mice With Clonorchis sinensis Infection.
    Article Snippet: Total RNA was quantified using a NanoDrop ND-2000 (Thermo Scientific, Waltham, MA, USA), and RNA integrity was assessed using an Agilent Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA, USA). .. Three pairs of liver samples were selected for lncRNA microarray analysis using an Agilent Mouse Gene Expression Array (8*60K, design ID: 028005). .. The microarray contains 55,681 probes for 39,430 mouse mRNA and 16,251 mouse lncRNAs, which are derived from RefSeq Build 37, Ensemble Release 55, Unigene Build 176, GenBank (Apr 2009), and RIKEN 3.

    Article Title: Long Non-Coding RNA and mRNA Expression Analysis in Liver of Mice With Clonorchis sinensis Infection
    Article Snippet: Total RNA was quantified using a NanoDrop ND-2000 (Thermo Scientific, Waltham, MA, USA), and RNA integrity was assessed using an Agilent Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA, USA). .. Three pairs of liver samples were selected for lncRNA microarray analysis using an Agilent Mouse Gene Expression Array (8*60K, design ID: 028005). .. The microarray contains 55,681 probes for 39,430 mouse mRNA and 16,251 mouse lncRNAs, which are derived from RefSeq Build 37, Ensemble Release 55, Unigene Build 176, GenBank (Apr 2009), and RIKEN 3.

    Article Title: MicroRNA-145 Regulates Human Corneal Epithelial Differentiation
    Article Snippet: MicroRNA profiling was performed using Agilent Human microRNA Microarray V2 platform, which screens for the expression of 723 human microRNAs from Sanger database v.10.1. .. For gene expression analysis, Agilent Whole Human Genome Oligo Microarray was used. .. RNA samples were labeled with cyanine-3 (Cy3) using the Agilent One–Color Labeling kit and hybridized to the array according to the manufacturer's protocol.

    Expressing:

    Article Title: Transcriptomic analysis reveals distinct adaptive molecular mechanism in the hippocampal CA3 from rats susceptible or not-susceptible to hyperthermia-induced seizures.
    Article Snippet: :(0123456789) Scientific Reports | (2023) 13:10265 | https://doi.org/10.1038/s41598-023-37535-w dye Cy3 followed the manufacturer’s protocols (One-Color Microarray-Based Gene Expression Analysis-Quick Amp Labeling and miRNA Complete Labeling and Hyb Kit, Agilent Technologies). .. A subset of 58 RNA samples was used for miRNA expression analysis, using the whole rat miRNA 8x15K oligonucleotide microarrays (Rat miRNA Microarray slide, G4471A-070154, Agilent Technologies), containing probes for 758 rat miRNAs based on miRBase database (release 21.0). .. The images were captured by the reader Agilent Bundle according to the parameters recommended for bioarrays and extracted by Agilent Feature Extraction software version 11.5.1.1 (https:// www. agile nt. com/) for both gene and miRNA expression.



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    NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by <t>microarray</t> analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.
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    two-color microarray-based gene expression analysis microarrays  (Agilent technologies)
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    Agilent technologies two-color microarray-based gene expression analysis microarrays
    Summary of apoptosis pathways in human and Oncopig cells. Summarized apoptotic pathways altered by gemcitabine treatment in Oncopig BCCL and 5637 cells evaluated by <t>microarray.</t> There were multiple possible cellular pathways involved in apoptosis induction, such as: TP53INP1/P53/BCL/BAX/CASPASE mitochondrial intrinsical pathway; TP53INP1/TP73 activation; FAS/RB1/GADD45B/CASPASE pathway and cell rounding up by RND1 and/or ZMYM6.
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    Image Search Results


    NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

    Journal: Journal of Experimental Botany

    Article Title: NAC61 regulates late- and post-ripening osmotic, oxidative, and biotic stress responses in grapevine

    doi: 10.1093/jxb/erad507

    Figure Lengend Snippet: NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

    Article Snippet: The cDNA synthesis, labelling, hybridization, and washing steps were performed according to the Agilent Microarray-Based Gene Expression Analysis Guide ( https://www.agilent.com/cs/library/usermanuals/Public/G4140-90040_GeneExpression_OneColor_6.9.pdf ).

    Techniques: Expressing, Microarray

    Summary of apoptosis pathways in human and Oncopig cells. Summarized apoptotic pathways altered by gemcitabine treatment in Oncopig BCCL and 5637 cells evaluated by microarray. There were multiple possible cellular pathways involved in apoptosis induction, such as: TP53INP1/P53/BCL/BAX/CASPASE mitochondrial intrinsical pathway; TP53INP1/TP73 activation; FAS/RB1/GADD45B/CASPASE pathway and cell rounding up by RND1 and/or ZMYM6.

    Journal: Frontiers in Oncology

    Article Title: Oncopig bladder cancer cells recapitulate human bladder cancer treatment responses in vitro

    doi: 10.3389/fonc.2024.1323422

    Figure Lengend Snippet: Summary of apoptosis pathways in human and Oncopig cells. Summarized apoptotic pathways altered by gemcitabine treatment in Oncopig BCCL and 5637 cells evaluated by microarray. There were multiple possible cellular pathways involved in apoptosis induction, such as: TP53INP1/P53/BCL/BAX/CASPASE mitochondrial intrinsical pathway; TP53INP1/TP73 activation; FAS/RB1/GADD45B/CASPASE pathway and cell rounding up by RND1 and/or ZMYM6.

    Article Snippet: To obtain the gene transcription panel of treated and untreated human and Oncopig cells, the Two-Color Microarray-Based Gene Expression Analysis microarrays (Agilent Technologies Inc, Santa Clara, CA, USA) were used according to the manufacturer’s instructions.

    Techniques: Microarray, Activation Assay